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  5. Sopen11g009960

Sopen11g009960


Description : Retrotransposon gag protein


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g009960
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.03 Orthogroups_2024-Update
Kfl00590_0100 kfl00590_0100_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os06g07400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Pp1s5_46V6 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.02 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g022180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen02g012390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen05g017590 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen05g023200 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen05g026240 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen06g012340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g016840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g014830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen09g025530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g019880 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen11g022720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g010870 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 68 158
IPR000477 RT_dom 557 627
No external refs found!