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  5. A4A49_34426

A4A49_34426


Description : e3 ubiquitin-protein ligase pub24


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_34426
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
414754 No alias plant U-box 25 0.03 Orthogroups_2024-Update
At1g66160 No alias U-box domain-containing protein 20... 0.03 Orthogroups_2024-Update
At5g37490 No alias U-box domain-containing protein 21... 0.03 Orthogroups_2024-Update
Brara.B01640.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E02265.1 No alias U-Box-group-III E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H00292.1 No alias U-Box-group-III E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.04 Orthogroups_2024-Update
Glyma.10G262600 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Glyma.19G199300 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Glyma.19G200200 No alias plant U-box 22 0.03 Orthogroups_2024-Update
MA_311559g0010 No alias (at3g52450 : 124.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
MA_684442g0010 No alias (at3g52450 : 140.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
Potri.001G216100 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Potri.006G202700 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Seita.1G186200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G075400.2 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.006G086400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.04 Orthogroups_2024-Update
Solyc01g009330 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 79
No external refs found!