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  5. A4A49_35525

A4A49_35525


Description : putative pectate lyase 16


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_35525
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.04 Orthogroups_2024-Update
A4A49_18000 No alias putative pectate lyase 10 0.04 Orthogroups_2024-Update
A4A49_26358 No alias putative pectate lyase p18 0.05 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.02 Orthogroups_2024-Update
Brara.G00648.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
GRMZM2G323418 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.04G173900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os10g31910 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10205415g0010 No alias (at5g63180 : 429.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00005709-RA No alias (at3g07010 : 494.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00012211-RA No alias (at5g63180 : 515.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00020308-RA No alias (at4g13710 : 598.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00029400-RA No alias (at5g63180 : 504.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00029499-RA No alias (at5g63180 : 517.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00030878-RA No alias (at5g48900 : 447.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00036578-RA No alias (at5g48900 : 578.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s206_50V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Seita.4G230900.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc02g087670 No alias Pectate lyase (AHRD V3.3 *** K4BBS3_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g055510 No alias Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC) 0.02 Orthogroups_2024-Update
Solyc09g061890 No alias Pectate lyase (AHRD V3.3 *** M1BAL5_SOLTU) 0.03 Orthogroups_2024-Update
Solyc11g008140 No alias Pectate lyase (AHRD V3.3 *** K4D575_SOLLC) 0.03 Orthogroups_2024-Update
Sopen02g032420 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen02g038070 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 118 303
No external refs found!