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  5. A4A49_35755

A4A49_35755


Description : putative pectate lyase p59


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_35755
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.04 Orthogroups_2024-Update
At1g30350 No alias Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] 0.03 Orthogroups_2024-Update
At5g09280 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q9FY87] 0.03 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.05 Orthogroups_2024-Update
Brara.H00489.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.I00287.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.05 Orthogroups_2024-Update
Glyma.01G042700 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
LOC_Os06g38510 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019559-RA No alias (at4g13710 : 600.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
Potri.006G122000 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G038000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.004G091000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.010G034200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 27 85
IPR002022 Pec_lyase 182 362
No external refs found!