1. Home
  2. Species
  3. Nicotiana attenuata
  4. Sequence
  5. A4A49_35805

A4A49_35805


Description : e3 ubiquitin-protein ligase cop1


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_35805
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
101888 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12413 No alias e3 ubiquitin-protein ligase cop1 0.03 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.07 Orthogroups_2024-Update
At2g32950 No alias FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2] 0.02 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Bradi3g57667 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03144.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Brara.C02328.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Brara.E00142.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Brara.E02608.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
GRMZM2G061602 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
GRMZM2G126795 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G214900 No alias SPA1-related 2 0.04 Orthogroups_2024-Update
Glyma.12G224600 No alias SPA1-related 3 0.06 Orthogroups_2024-Update
Glyma.13G276700 No alias SPA1-related 3 0.07 Orthogroups_2024-Update
Glyma.14G049700 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G090080.2 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
HORVU6Hr1G079680.3 No alias component *(COP1) of COP1-SPA light signal transduction... 0.02 Orthogroups_2024-Update
Kfl00502_0040 kfl00502_0040_v1.1 (at4g11110 : 483.0) Encodes a member of the SPA... 0.02 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.05 Orthogroups_2024-Update
PSME_00003075-RA No alias (at1g53090 : 517.0) Encodes a member of the SPA... 0.03 Orthogroups_2024-Update
Potri.001G399600 No alias SPA1-related 3 0.05 Orthogroups_2024-Update
Potri.011G119500 No alias SPA1-related 3 0.04 Orthogroups_2024-Update
Potri.014G095300 No alias SPA (suppressor of phyA-105) protein family 0.03 Orthogroups_2024-Update
Potri.014G159300 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s180_148V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s30_295V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s81_234V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Seita.1G334800.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
Seita.3G139600.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
Sobic.009G238000.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Solyc07g063120 No alias Ubiquitin ligase protein cop1, putative (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Solyc11g011980 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc12g005950 No alias COP1 homolog 0.03 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.05 Orthogroups_2024-Update
Sopen07g031310 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen11g006790 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
Sopen12g007160 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 536 572
IPR001680 WD40_repeat 450 487
No external refs found!