Sopen11g011570

Description : PIF1-like helicase

Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g011570
Cluster	HCCA clusters: Cluster_203

Target	Alias	Description	ECC score	Gene Family Method
At3g51700	No alias	ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SCT8]	0.02	Orthogroups_2024-Update
Brara.A01906.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Glyma.01G057801	No alias	Function unknown	0.03	Orthogroups_2024-Update
Glyma.04G116000	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.07G171700	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.10G108221	No alias	Function unknown	0.03	Orthogroups_2024-Update
Glyma.13G154900	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.15G193800	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.16G109000	No alias	PIF1 helicase	0.03	Orthogroups_2024-Update
Glyma.19G051300	No alias	PIF1 helicase	0.02	Orthogroups_2024-Update
Glyma.20G059700	No alias	Function unknown	0.02	Orthogroups_2024-Update
HORVU7Hr1G003580.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU7Hr1G085360.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os06g22500	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Seita.4G140900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc04g076160	No alias	AT hook motif-containing protein, putative, expressed...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	171	333
IPR013955	Rep_factor-A_C	10	145

External Links

No external refs found!

Sopen11g011570

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation