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  5. A4A49_36833

A4A49_36833


Description : mediator of rna polymerase ii transcription subunit 36a


Gene families : OG_42_0002666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_36833
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
171051 No alias fibrillarin 2 0.02 Orthogroups_2024-Update
At4g25630 No alias Mediator of RNA polymerase II transcription subunit 36a... 0.05 Orthogroups_2024-Update
Bradi1g32010 No alias fibrillarin 1 0.03 Orthogroups_2024-Update
Brara.A01555.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Brara.K00184.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.04 Orthogroups_2024-Update
HORVU6Hr1G091860.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
LOC_Os05g08360 No alias rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed 0.02 Orthogroups_2024-Update
MA_124463g0010 No alias (at4g25630 : 414.0) encodes a fibrillarin, a key... 0.04 Orthogroups_2024-Update
Potri.015G147500 No alias fibrillarin 1 0.05 Orthogroups_2024-Update
Pp1s177_5V6 No alias loc398434 protein 0.06 Orthogroups_2024-Update
Seita.1G370900.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.02 Orthogroups_2024-Update
Sobic.004G349700.1 No alias methyltransferase component *(Nop1/fibrillarin) of... 0.03 Orthogroups_2024-Update
Solyc03g025270 No alias fibrillarin 2 (AHRD V3.3 *** AT4G25630.1) 0.04 Orthogroups_2024-Update
Sopen03g004100 No alias Fibrillarin 0.02 Orthogroups_2024-Update
evm.model.tig00001049.16 No alias (at5g52470 : 336.0) encodes a fibrillarin, a key... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006364 rRNA processing IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000692 Fibrillarin 78 305
No external refs found!