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  5. A4A49_38131

A4A49_38131


Description : pentatricopeptide repeat-containing protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_38131
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
131810 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.02 Orthogroups_2024-Update
At1g16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.03 Orthogroups_2024-Update
At2g42920 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.03 Orthogroups_2024-Update
At3g09040 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.03 Orthogroups_2024-Update
At4g21300 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Orthogroups_2024-Update
At5g16860 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Orthogroups_2024-Update
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.04 Orthogroups_2024-Update
At5g40410 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.05 Orthogroups_2024-Update
Brara.F00497.1 No alias RNA editing factor *(OTP82) 0.03 Orthogroups_2024-Update
Brara.F00580.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.03 Orthogroups_2024-Update
GRMZM2G077420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G174500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G158200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G061600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G090900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G040610.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g74600 No alias vegetative storage protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g40750 No alias pentatricopeptide domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g13830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g27880 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g32620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g58100 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g27790 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g09370 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g25280 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g38610 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_100287g0010 No alias (at3g12770 : 646.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_10293513g0010 No alias (at4g13650 : 527.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00006159-RA No alias (at3g46790 : 260.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00011210-RA No alias (at1g15510 : 705.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G466066 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Potri.002G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G156800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.012G109300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G191200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g081900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen04g022860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g006390 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen10g024640 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 756 879
IPR002885 Pentatricopeptide_repeat 555 579
IPR002885 Pentatricopeptide_repeat 451 473
IPR002885 Pentatricopeptide_repeat 319 344
IPR002885 Pentatricopeptide_repeat 216 243
IPR002885 Pentatricopeptide_repeat 378 407
IPR002885 Pentatricopeptide_repeat 583 613
IPR002885 Pentatricopeptide_repeat 482 503
IPR002885 Pentatricopeptide_repeat 245 275
IPR002885 Pentatricopeptide_repeat 347 377
IPR002885 Pentatricopeptide_repeat 116 138
IPR002885 Pentatricopeptide_repeat 141 188
No external refs found!