Solyc02g092080

Description : 60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)

Gene families : OG_42_0001552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001552_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc02g092080
Cluster	HCCA clusters: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
271663	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
A4A49_58225	No alias	60s ribosomal protein l23a	0.09	Orthogroups_2024-Update
A4A49_63547	No alias	60s ribosomal protein l23a	0.05	Orthogroups_2024-Update
A4A49_64626	No alias	60s ribosomal protein l23a	0.06	Orthogroups_2024-Update
At3g55280	No alias	60S ribosomal protein L23a-2...	0.06	Orthogroups_2024-Update
Bradi1g06220	No alias	ribosomal protein L23AB	0.07	Orthogroups_2024-Update
Bradi5g14750	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
Brara.C02018.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.D02393.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.E00623.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.I03781.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Cre06.g282500	No alias	ribosomal protein L23AA	0.06	Orthogroups_2024-Update
GRMZM2G083253	No alias	ribosomal protein L23AB	0.08	Orthogroups_2024-Update
Glyma.11G143400	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Glyma.12G066700	No alias	ribosomal protein L23AB	0.06	Orthogroups_2024-Update
Glyma.13G332700	No alias	ribosomal protein L23AB	0.08	Orthogroups_2024-Update
Glyma.15G041500	No alias	ribosomal protein L23AB	0.03	Orthogroups_2024-Update
Glyma.18G286400	No alias	ribosomal protein L23AB	0.04	Orthogroups_2024-Update
HORVU2Hr1G086360.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
Kfl00360_0040	kfl00360_0040_v1.1	(q07761\|rl23a_tobac : 206.0) 60S ribosomal protein L23a...	0.02	Orthogroups_2024-Update
LOC_Os04g42270	No alias	60S ribosomal protein L23A, putative, expressed	0.03	Orthogroups_2024-Update
Mp2g00570.1	No alias	component RPL23a of LSU proteome component	0.04	Orthogroups_2024-Update
Potri.008G050200	No alias	ribosomal protein L23AB	0.09	Orthogroups_2024-Update
Pp1s146_96V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.05	Orthogroups_2024-Update
Pp1s46_72V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.11	Orthogroups_2024-Update
Pp1s47_274V6	No alias	60S ribosomal protein L23A [Fritillaria agrestis]	0.06	Orthogroups_2024-Update
Seita.1G230300.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.7G156000.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Sobic.006G137100.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Sobic.010G060500.1	No alias	component *(uL23) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Sopen09g001610	No alias	Ribosomal protein L23, N-terminal domain	0.11	Orthogroups_2024-Update
Sopen10g035710	No alias	Ribosomal protein L23, N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.contig_3754.2	No alias	(q07761\|rl23a_tobac : 174.0) 60S ribosomal protein L23a...	0.11	Orthogroups_2024-Update
evm.model.tig00000037.39	No alias	(q07761\|rl23a_tobac : 188.0) 60S ribosomal protein L23a...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006183	GTP biosynthetic process	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006228	UTP biosynthetic process	IEP	Predicted GO
BP	GO:0006241	CTP biosynthetic process	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006333	chromatin assembly or disassembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009116	nucleoside metabolic process	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009148	pyrimidine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0009208	pyrimidine ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009209	pyrimidine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046036	CTP metabolic process	IEP	Predicted GO
BP	GO:0046039	GTP metabolic process	IEP	Predicted GO
BP	GO:0046051	UTP metabolic process	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046132	pyrimidine ribonucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046134	pyrimidine nucleoside biosynthetic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predicted GO
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013025	Ribosomal_L25/23	150	210

External Links

No external refs found!

Solyc02g092080

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation