A4A49_39430

Description : haca ribonucleoprotein complex subunit 4

Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Nicotiana release: A4A49_39430
Cluster	HCCA clusters: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
At3g57150	No alias	Uncharacterized protein At3g57150 (Fragment)...	0.03	Orthogroups_2024-Update
Bradi2g04950	No alias	homologue of NAP57	0.04	Orthogroups_2024-Update
Bradi4g38770	No alias	homologue of NAP57	0.03	Orthogroups_2024-Update
Brara.G01728.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	Orthogroups_2024-Update
GRMZM2G044128	No alias	homologue of NAP57	0.03	Orthogroups_2024-Update
GRMZM2G172956	No alias	homologue of NAP57	0.04	Orthogroups_2024-Update
Glyma.15G056100	No alias	homologue of NAP57	0.03	Orthogroups_2024-Update
HORVU2Hr1G027370.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	Orthogroups_2024-Update
Potri.016G041200	No alias	homologue of NAP57	0.02	Orthogroups_2024-Update
Seita.2G404800.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	Orthogroups_2024-Update
Seita.5G057000.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.05	Orthogroups_2024-Update
Sobic.002G389500.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.07	Orthogroups_2024-Update
Sobic.003G117100.1	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.08	Orthogroups_2024-Update
Solyc02g081810	No alias	H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***...	0.06	Orthogroups_2024-Update
Sopen02g026410	No alias	DKCLD (NUC011) domain	0.03	Orthogroups_2024-Update
evm.model.tig00000553.10	No alias	(at3g57150 : 635.0) Encodes a putative pseudouridine...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032819	TruB_C	233	299
IPR002501	PsdUridine_synth_N	116	232
IPR012960	Dyskerin-like	55	112
IPR002478	PUA	303	375

External Links

No external refs found!