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  5. Sopen11g013360

Sopen11g013360


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g013360

Target Alias Description ECC score Gene Family Method Actions
At3g20980 No alias Gag-Pol-related retrotransposon family protein... 0.03 Orthogroups_2024-Update
LOC_Os02g45040 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40550 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g29950 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g43560 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Pp1s132_22V6 No alias No description available 0.04 Orthogroups_2024-Update
Sobic.008G183150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc06g011420 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g062400 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g063060 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g056140 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g007200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g014900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g013740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g018030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g021210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g025120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen11g018860 No alias gag-polypeptide of LTR copia-type 0.04 Orthogroups_2024-Update
Sopen11g023560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 314 427
IPR025724 GAG-pre-integrase_dom 19 71
IPR001584 Integrase_cat-core 84 199
No external refs found!