Sopen11g013370

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000495 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g013370
Cluster	HCCA clusters: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
Solyc05g021380	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc07g015770	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc08g016700	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc11g017260	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g010910	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen01g014470	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g021820	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g017090	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	408	424
IPR001584	Integrase_cat-core	1283	1394
IPR005162	Retrotrans_gag_dom	204	300
IPR000477	RT_dom	741	900

External Links

No external refs found!