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  5. A4A49_40716

A4A49_40716


Description : putative pectate lyase 16


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_40716
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
A4A49_24630 No alias putative pectate lyase 3 0.04 Orthogroups_2024-Update
A4A49_25976 No alias putative pectate lyase p59 0.04 Orthogroups_2024-Update
A4A49_26358 No alias putative pectate lyase p18 0.02 Orthogroups_2024-Update
At3g01270 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70] 0.02 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G175300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023845-RA No alias (at4g13710 : 608.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Potri.011G093400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s204_112V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s28_242V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Sobic.010G176400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sopen02g025600 No alias Pectate lyase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 132 317
No external refs found!