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  5. A4A49_41445

A4A49_41445


Description : putative polygalacturonase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Nicotiana release: A4A49_41445
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
78556 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_11852 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
At3g16850 No alias Pectin lyase-like superfamily protein... 0.05 Orthogroups_2024-Update
Bradi1g52050 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g09597 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C03174.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.H02383.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.I04239.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Brara.K00653.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.05G210900 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.07G244200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G179000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10436451g0020 No alias (at4g23500 : 273.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Pp1s294_11V6 No alias glycoside hydrolase family 28 expressed 0.03 Orthogroups_2024-Update
Solyc06g060170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1) 0.04 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.05 Orthogroups_2024-Update
Sopen06g020290 No alias Glycosyl hydrolases family 28 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 151 432
No external refs found!