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  5. Sopen11g015760

Sopen11g015760


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g015760
Cluster HCCA clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Kfl00844_0040 kfl00844_0040_v1.1 (q40471|if4a9_tobac : 738.0) Eukaryotic initiation... 0.02 Orthogroups_2024-Update
Pp1s383_1V6 No alias Eukaryotic initiation factor 4A-9 (ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Solyc11g033280 No alias Dead box ATP-dependent RNA helicase, putative (AHRD V3.3... 0.03 Orthogroups_2024-Update
evm.model.contig_454.9 No alias (p35683|if4a_orysa : 541.0) Eukaryotic initiation factor... 0.01 Orthogroups_2024-Update
evm.model.tig00001339.22 No alias (at3g19760 : 627.0) Encodes an RNA helicase that may be... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 61 223
IPR001650 Helicase_C 262 370
No external refs found!