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  5. A4A49_56752

A4A49_56752


Description : putative histone h2a.1


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_56752
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Bradi1g25390 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Bradi4g28560 No alias histone H2A 6 0.01 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.01 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.03 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU6Hr1G009020.1 No alias histone *(H2A) 0.01 Orthogroups_2024-Update
HORVU7Hr1G030120.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
MA_10425800g0010 No alias (at1g54690 : 112.0) Encodes HTA3, a histone H2A protein.... 0.03 Orthogroups_2024-Update
MA_169054g0020 No alias (p50567|h2a_chlre : 140.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.01 Orthogroups_2024-Update
PSME_00034360-RA No alias (q94e96|h2a5_orysa : 203.0) Probable histone H2A.5 -... 0.03 Orthogroups_2024-Update
PSME_00034361-RA No alias (q94e96|h2a5_orysa : 194.0) Probable histone H2A.5 -... 0.02 Orthogroups_2024-Update
Potri.013G028900 No alias gamma histone variant H2AX 0.04 Orthogroups_2024-Update
Sobic.009G015900.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.02 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.03 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g035820 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 38 115
IPR032454 Histone_H2A_C 118 152
No external refs found!