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  5. A4A49_56777

A4A49_56777


Description : chd3-type chromatin-remodeling factor pickle


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_56777
Cluster HCCA clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
A4A49_27543 No alias putative atp-dependent dna helicase chr12 0.03 Orthogroups_2024-Update
Bradi2g12950 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Brara.J01708.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
Glyma.08G086100 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
MA_104034g0010 No alias (at5g66750 : 811.0) Protein is similar to SWI2/SNF2... 0.03 Orthogroups_2024-Update
Pp1s166_101V6 No alias chromodomain helicase dna binding protein 6 0.03 Orthogroups_2024-Update
Pp1s65_183V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update
Solyc02g068560 No alias CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen11g023970 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009463 DUF1087 842 901
IPR019787 Znf_PHD-finger 52 94
IPR023780 Chromo_domain 114 154
IPR023780 Chromo_domain 191 239
IPR001650 Helicase_C 605 718
IPR009462 DUF1086 934 1062
IPR000330 SNF2_N 303 583
No external refs found!