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  5. Sopen11g018860

Sopen11g018860


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g018860
Cluster HCCA clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
A4A49_20443 No alias putative mitochondrial protein 0.02 Orthogroups_2024-Update
LOC_Os10g30510 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g29950 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc09g056140 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g005210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g014900 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g014300 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g028000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g009400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g007880 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g013360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g020540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g024470 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!