1. Home
  2. Species
  3. Nicotiana attenuata
  4. Sequence
  5. A4A49_60693

A4A49_60693


Description : pre-mrna-processing-splicing factor 8a


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_60693
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Glyma.15G007100 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
PSME_00012209-RA No alias (at1g80070 : 3342.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update
evm.model.tig00000093.137 No alias (at1g80070 : 3340.0) a genetic locus involved in... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR019581 Prp8_U5-snRNA-bd 1270 1403
IPR000555 JAMM/MPN+_dom 2161 2258
IPR019580 Prp8_U6-snRNA-bd 1502 1660
IPR021983 PRP8_domainIV 1820 2049
IPR012592 PROCN 455 860
IPR019582 RRM_spliceosomal_PrP8 1045 1135
IPR012591 PRO8NT 118 269
IPR012984 PROCT 2272 2392
No external refs found!