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  5. Sopen11g019830

Sopen11g019830


Description : Integrase core domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g019830
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
LOC_Os01g45290 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g53570 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g21580 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g37340 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g052430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen05g005110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g016700 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g026240 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen08g013300 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g015130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g016630 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g025530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen10g005990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g011940 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 1006 1168
IPR001584 Integrase_cat-core 1544 1652
IPR005162 Retrotrans_gag_dom 150 240
No external refs found!