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  5. Sopen11g019880

Sopen11g019880


Description : Retroviral aspartyl protease


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g019880
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
LOC_Os08g26650 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Mpzg00520.1 No alias Uncharacterized mitochondrial protein AtMg00860... 0.03 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.05 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 760 856
IPR000477 RT_dom 1256 1415
No external refs found!