A4A49_62738


Description : regulator of nonsense transcripts 1-like protein


Gene families : OG_42_0003239 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003239_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_62738
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Cre02.g092500 No alias RNA helicase, putative 0.02 Orthogroups_2024-Update
Pp1s44_135V6 No alias upf1 regulator of nonsense transcripts homolog 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005737 cytoplasm IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0016787 hydrolase activity IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 486 550
IPR018999 RNA-helicase_UPF1_UPF2-interct 132 285
No external refs found!