Sopen11g021290

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g021290
Cluster	HCCA clusters: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.01	Orthogroups_2024-Update
LOC_Os10g42880	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Potri.019G017800	No alias	Function unknown	0.03	Orthogroups_2024-Update
Solyc04g040100	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc08g043150	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc10g054430	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc11g063750	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc12g019380	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc12g038850	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen00g001490	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g008200	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g025330	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen01g026660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g004560	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g011110	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g028910	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen03g021380	No alias	Reverse transcriptase-like	0.03	Orthogroups_2024-Update
Sopen05g017540	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g023460	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen07g004930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g008850	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen11g012620	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g020800	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen11g022720	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g023740	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g025280	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen12g021520	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
evm.model.contig_2215.2	No alias	(original description: no original description)	0.02	Orthogroups_2024-Update
evm.model.contig_2498.1	No alias	(p31843\|rrpo_oenbe : 132.0) RNA-directed DNA polymerase...	0.02	Orthogroups_2024-Update
evm.model.contig_3474.1	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
evm.model.contig_3493.3	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
evm.model.contig_3758.2	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	741	900
IPR001878	Znf_CCHC	408	424
IPR001584	Integrase_cat-core	1283	1394
IPR005162	Retrotrans_gag_dom	204	300

External Links

No external refs found!

Sopen11g021290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation