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  5. Sopen11g022040

Sopen11g022040


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g022040
Cluster HCCA clusters: Cluster_329

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.03 Orthogroups_2024-Update
Kfl01162_0030 kfl01162_0030_v1.1 (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl01382_0010 kfl01382_0010_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os08g30360 No alias retrotransposon protein, putative, Ty1-copia subclass 0.03 Orthogroups_2024-Update
Solyc02g062480 No alias No description available 0.03 Orthogroups_2024-Update
Solyc07g009390 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g061870 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g011400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g020190 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen03g021340 No alias gag-polypeptide of LTR copia-type 0.05 Orthogroups_2024-Update
Sopen04g022060 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g031680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g008430 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g010950 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g011020 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen05g024980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g008510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g009250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g011210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen10g007390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g017070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen11g019290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g024140 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 397 457
IPR001584 Integrase_cat-core 197 290
No external refs found!