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  5. Sopen11g022120

Sopen11g022120


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g022120
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g41690 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc05g021080 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g059360 No alias No description available 0.02 Orthogroups_2024-Update
Sopen06g011320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g008510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 1230 1339
IPR001584 Integrase_cat-core 834 947
IPR001584 Integrase_cat-core 142 208
IPR025314 DUF4219 19 44
IPR025724 GAG-pre-integrase_dom 751 819
No external refs found!