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  5. Sopen11g022280

Sopen11g022280


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g022280
Cluster HCCA clusters: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen05g012930 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g009810 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen07g008930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen08g015130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.06 Orthogroups_2024-Update
Sopen11g008450 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g023250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g011100 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g021520 No alias Integrase core domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029472 Copia-like_N 35 81
IPR013103 RVT_2 240 422
No external refs found!