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  5. Potri.001G019500

Potri.001G019500


Description : SLOW GROWTH 1


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G019500
Cluster HCCA clusters: cluster_0002

Target Alias Description ECC score Gene Family Method Actions
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
412514 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At5g13270 No alias Pentatricopeptide repeat-containing protein At5g13270,... 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.E00200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03349.1 No alias RNA editing factor *(REME1) & RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G474929 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.01G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G291800 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G190600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G213300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G118200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G016600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G013300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G023070.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
HORVU3Hr1G023090.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
MA_13022g0010 No alias (at2g13600 : 530.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_28051g0010 No alias (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_32723g0010 No alias (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_385322g0010 No alias (at1g08070 : 385.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.04 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Seita.1G334200.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G028800.1 No alias RNA editing factor *(PGN) 0.02 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Sobic.003G337200.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G266300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.04 Orthogroups_2024-Update
Sobic.006G146900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g119950 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc04g076330 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Solyc10g080220 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g006700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.06 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen01g006160 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g015160 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.06 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.06 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen04g022860 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen10g004410 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 116 165
IPR002885 Pentatricopeptide_repeat 452 500
IPR002885 Pentatricopeptide_repeat 219 266
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 593 621
IPR002885 Pentatricopeptide_repeat 526 551
IPR002885 Pentatricopeptide_repeat 293 319
No external refs found!