Sopen11g022600

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g022600
Cluster	HCCA clusters: Cluster_304

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os03g29864	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g06110	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Potri.019G017800	No alias	Function unknown	0.02	Orthogroups_2024-Update
Pp1s5_46V6	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen01g022180	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g012390	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g035450	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen05g011340	No alias	Integrase core domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	151	246
IPR013103	RVT_2	1539	1750
IPR023780	Chromo_domain	1375	1428
IPR001584	Integrase_cat-core	1098	1209
IPR000477	RT_dom	592	749

External Links

No external refs found!