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  5. Sopen11g022720

Sopen11g022720


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g022720
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g015150 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.02 Orthogroups_2024-Update
Sopen04g030350 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g009810 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g010330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g008930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen08g014830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g025530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g021290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.contig_2215.2 No alias (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2498.1 No alias (p31843|rrpo_oenbe : 132.0) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update
evm.model.contig_3493.3 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3758.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 719 879
IPR005162 Retrotrans_gag_dom 162 258
IPR001584 Integrase_cat-core 1259 1370
No external refs found!