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  5. Potri.001G075800

Potri.001G075800


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G075800
Cluster HCCA clusters: cluster_0035

Target Alias Description ECC score Gene Family Method Actions
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g01970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g20480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g01440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A01531.1 No alias plastidial RNA splicing factor *(OTP70) 0.02 Orthogroups_2024-Update
Brara.F01067.1 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
Brara.G01254.1 No alias RNA editing factor *(CREF7) 0.03 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g08120 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g13540 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
MA_10164206g0010 No alias (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_10429371g0010 No alias (at3g57430 : 716.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_110g0010 No alias (at4g02750 : 501.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_117650g0010 No alias (at1g11290 : 615.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_135075g0020 No alias (at3g57430 : 714.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_185098g0010 No alias (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... 0.02 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_9360929g0010 No alias (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_95261g0010 No alias (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00015835-RA No alias (at4g01030 : 610.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00030552-RA No alias (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G272600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G187600.1 No alias processivity component *(REV7) of DNA polymerase zeta complex 0.03 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g081110 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g065250 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g019790 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g026730 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen05g007940 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 749 873
IPR002885 Pentatricopeptide_repeat 572 601
IPR002885 Pentatricopeptide_repeat 544 569
IPR002885 Pentatricopeptide_repeat 223 243
IPR002885 Pentatricopeptide_repeat 355 379
IPR002885 Pentatricopeptide_repeat 612 639
IPR002885 Pentatricopeptide_repeat 455 482
IPR002885 Pentatricopeptide_repeat 717 745
IPR002885 Pentatricopeptide_repeat 427 454
IPR002885 Pentatricopeptide_repeat 120 145
IPR002885 Pentatricopeptide_repeat 249 295
IPR002885 Pentatricopeptide_repeat 146 191
No external refs found!