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  5. Potri.001G100600

Potri.001G100600


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G100600
Cluster HCCA clusters: cluster_0065

Target Alias Description ECC score Gene Family Method Actions
74842 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02940.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G085920.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G079830.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Seita.3G227100.1 No alias RNA editing factor *(MEF21) 0.03 Orthogroups_2024-Update
Seita.6G159500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G223000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G081000.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G201400.1 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
Sobic.010G088200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.02 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 665 688
IPR002885 Pentatricopeptide_repeat 264 286
IPR002885 Pentatricopeptide_repeat 463 486
IPR002885 Pentatricopeptide_repeat 192 222
IPR002885 Pentatricopeptide_repeat 166 186
IPR002885 Pentatricopeptide_repeat 492 514
IPR002885 Pentatricopeptide_repeat 91 139
IPR002885 Pentatricopeptide_repeat 388 433
IPR002885 Pentatricopeptide_repeat 592 638
No external refs found!