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  5. Potri.001G108500

Potri.001G108500


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G108500
Cluster HCCA clusters: cluster_0176

Target Alias Description ECC score Gene Family Method Actions
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Orthogroups_2024-Update
Brara.H03084.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G023070.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
HORVU3Hr1G023090.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00022741-RA No alias (at4g18750 : 598.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Seita.3G069000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 221
IPR002885 Pentatricopeptide_repeat 224 250
IPR002885 Pentatricopeptide_repeat 165 188
IPR002885 Pentatricopeptide_repeat 289 315
IPR002885 Pentatricopeptide_repeat 389 411
IPR002885 Pentatricopeptide_repeat 318 346
IPR002885 Pentatricopeptide_repeat 458 487
IPR002885 Pentatricopeptide_repeat 88 137
No external refs found!