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  5. Potri.001G253400

Potri.001G253400


Description : chromatin remodeling 5


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G253400
Cluster HCCA clusters: cluster_0042

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Kfl00004_0580 kfl00004_0580_v1.1 (at2g13370 : 1061.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 Orthogroups_2024-Update
Sopen01g029280 No alias SNF2 family N-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 937 1050
IPR025260 DUF4208 1535 1628
IPR000330 SNF2_N 637 908
IPR023780 Chromo_domain 529 583
No external refs found!