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  5. Sopen11g024860

Sopen11g024860


Description : Regulator of chromosome condensation (RCC1) repeat


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g024860
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Brara.F01931.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.10G226900 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
Glyma.18G044000 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
Glyma.20G165400 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
HORVU7Hr1G038070.31 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g72320 No alias FYVE zinc finger domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_54149g0010 No alias (at5g42140 : 796.0) Regulator of chromosome condensation... 0.02 Orthogroups_2024-Update
Solyc11g065120 No alias Regulator of chromosome condensation (RCC1) family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 430 478
IPR000408 Reg_chr_condens 325 373
IPR000408 Reg_chr_condens 545 594
IPR000408 Reg_chr_condens 376 426
IPR000408 Reg_chr_condens 599 646
IPR000408 Reg_chr_condens 493 542
IPR013591 Brevis_radix_dom 1027 1082
IPR000306 Znf_FYVE 650 716
IPR001849 PH_domain 17 123
IPR027988 BRX_N 911 946
No external refs found!