Potri.001G316500

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0012199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012199_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.001G316500
Cluster	HCCA clusters: cluster_0059

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc09g092050	No alias	Pentatricopeptide repeat-containing family protein (AHRD...	0.04	Orthogroups_2024-Update
Sopen09g034930	No alias	PPR repeat	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	310	359
IPR002885	Pentatricopeptide_repeat	145	175
IPR002885	Pentatricopeptide_repeat	558	581
IPR002885	Pentatricopeptide_repeat	253	279
IPR002885	Pentatricopeptide_repeat	386	411
IPR002885	Pentatricopeptide_repeat	437	495
IPR032867	DYW_dom	587	709
IPR002885	Pentatricopeptide_repeat	281	308

External Links

No external refs found!