Sopen11g025610

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g025610
Cluster	HCCA clusters: Cluster_308

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g32380	No alias	RNA-binding protein 47C	0.02	Orthogroups_2024-Update
HORVU2Hr1G046380.3	No alias	regulatory factor *(RBP45/47) of mRNA stress granule formation	0.04	Orthogroups_2024-Update
MA_10433660g0010	No alias	(at5g19350 : 259.0) RNA-binding (RRM/RBD/RNP motifs)...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	111	180
IPR000504	RRM_dom	227	288
IPR000504	RRM_dom	19	88

External Links

No external refs found!