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  5. Sopen11g026120

Sopen11g026120


Description : ATP dependent DNA ligase domain


Gene families : OG_42_0002339 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g026120
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
At1g08130 No alias DNA ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42572] 0.03 Orthogroups_2024-Update
Bradi2g46780 No alias DNA LIGASE 6 0.02 Orthogroups_2024-Update
Bradi3g29530 No alias DNA ligase 1 0.03 Orthogroups_2024-Update
Seita.5G274300.1 No alias DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond 0.02 Orthogroups_2024-Update
Seita.9G212100.1 No alias DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1)... 0.03 Orthogroups_2024-Update
Sobic.001G211500.1 No alias DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1)... 0.02 Orthogroups_2024-Update
Solyc11g066370 No alias DNA ligase (AHRD V3.3 *** K4D9P5_SOLLC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
BP GO:0006310 DNA recombination IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 429 633
IPR012309 DNA_ligase_ATP-dep_C 658 769
IPR012308 DNA_ligase_ATP-dep_N 187 363
No external refs found!