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  5. Potri.001G399600

Potri.001G399600


Description : SPA1-related 3


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G399600
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
101888 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
171333 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
98534 No alias SPA1-related 4 0.05 Orthogroups_2024-Update
A4A49_27287 No alias protein spa1-related 3 0.03 Orthogroups_2024-Update
A4A49_35805 No alias e3 ubiquitin-protein ligase cop1 0.05 Orthogroups_2024-Update
Bradi2g15900 No alias SPA (suppressor of phyA-105) protein family 0.03 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Brara.A03144.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Brara.C02328.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.06 Orthogroups_2024-Update
Brara.E00142.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
GRMZM2G061602 No alias SPA1-related 4 0.04 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G214900 No alias SPA1-related 2 0.04 Orthogroups_2024-Update
Glyma.12G155700 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
Glyma.13G276700 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
HORVU1Hr1G090080.2 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.04 Orthogroups_2024-Update
HORVU6Hr1G079680.3 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.03 Orthogroups_2024-Update
Mp5g12010.1 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.02 Orthogroups_2024-Update
PSME_00014824-RA No alias (at2g32950 : 499.0) Represses photomorphogenesis and... 0.02 Orthogroups_2024-Update
PSME_00014826-RA No alias (at2g32950 : 186.0) Represses photomorphogenesis and... 0.03 Orthogroups_2024-Update
Pp1s154_52V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Pp1s180_148V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s30_295V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Pp1s81_234V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Seita.1G334800.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
Sobic.004G312600.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.03 Orthogroups_2024-Update
Sobic.009G238000.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
Solyc07g063120 No alias Ubiquitin ligase protein cop1, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.05 Orthogroups_2024-Update
Sopen07g031310 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 678 714
IPR001680 WD40_repeat 593 620
IPR001680 WD40_repeat 763 798
No external refs found!