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  5. Sopen11g026510

Sopen11g026510


Description : SNF2 family N-terminal domain


Gene families : OG_42_0001293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g026510
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
At5g22750 No alias DNA repair protein RAD5A [Source:UniProtKB/Swiss-Prot;Acc:Q9FNI6] 0.02 Orthogroups_2024-Update
Glyma.13G320000 No alias DNA/RNA helicase protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G025750.2 No alias chromatin remodeling factor *(Rad5) 0.02 Orthogroups_2024-Update
PSME_00008176-RA No alias (at5g05130 : 678.0) DNA/RNA helicase protein; FUNCTIONS... 0.03 Orthogroups_2024-Update
Solyc11g066790 No alias Helicase protein with RING/U-box domain-containing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 906 1018
IPR000330 SNF2_N 394 783
IPR014905 HIRAN 158 265
No external refs found!