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  5. Sopen11g026540

Sopen11g026540


Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g026540
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G177229 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
Glyma.12G181300 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
MA_131998g0010 No alias (at1g27650 : 186.0) U2 auxiliary factor small subunit.... 0.03 Orthogroups_2024-Update
PSME_00011987-RA No alias (at1g27650 : 243.0) U2 auxiliary factor small subunit.... 0.02 Orthogroups_2024-Update
PSME_00019118-RA No alias (at1g27650 : 306.0) U2 auxiliary factor small subunit.... 0.03 Orthogroups_2024-Update
PSME_00027172-RA No alias (at5g42820 : 293.0) U2 auxiliary factor small subunit.... 0.02 Orthogroups_2024-Update
Pp1s15_14V6 No alias splicing factor u2af 38 kda subunit 0.02 Orthogroups_2024-Update
Seita.2G255600.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update
Solyc10g083640 No alias Zinc finger transcription factor 64 0.03 Orthogroups_2024-Update
Solyc11g066830 No alias Zinc finger transcription factor 68 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 14 37
IPR000571 Znf_CCCH 150 173
No external refs found!