Sopen11g026560

Description : LAGLIDADG DNA endonuclease family

Gene families : OG_42_0006907 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006907_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen11g026560
Cluster	HCCA clusters: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
Seita.1G287400.1	No alias	plastidial RNA splicing factor *(OTP51)	0.02	Orthogroups_2024-Update
Sobic.004G269600.1	No alias	plastidial RNA splicing factor *(OTP51)	0.03	Orthogroups_2024-Update
Solyc11g066850	No alias	Pentatricopeptide repeat-containing protein, putative...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	207	229
IPR002885	Pentatricopeptide_repeat	380	406
IPR002885	Pentatricopeptide_repeat	245	265
IPR002885	Pentatricopeptide_repeat	343	369
IPR004860	LAGLIDADG_2	444	608

External Links

No external refs found!