1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen11g026710

Sopen11g026710


Description : ABC-2 type transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g026710
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
441722 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
A4A49_20840 No alias abc transporter g family member 36 0.02 Orthogroups_2024-Update
Bradi3g34890 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Brara.C01827.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Brara.K01577.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
HORVU3Hr1G053380.1 No alias subfamily ABCG transporter 0.06 Orthogroups_2024-Update
PSME_00002220-RA No alias (q5z9s8|pdr12_orysa : 1203.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
Pp1s15_137V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Solyc05g055330 No alias Drug resistance transporter-like ABC domain protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029481 ABC_trans_N 115 165
IPR003439 ABC_transporter-like 191 373
IPR013581 PDR_assoc 744 804
IPR013525 ABC_2_trans 1187 1399
IPR013525 ABC_2_trans 527 739
IPR003439 ABC_transporter-like 890 1042
No external refs found!