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  5. Potri.002G155100

Potri.002G155100


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.002G155100
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
41818 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
79052 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.04 Orthogroups_2024-Update
At1g20230 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Orthogroups_2024-Update
Bradi1g00381 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.F03349.1 No alias RNA editing factor *(REME1) & RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
GRMZM2G380195 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G127500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G008800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G118200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G220450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G156600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G027560.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G069210.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g27880 No alias tetratricopeptide-like helical, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_110266g0010 No alias (at1g11290 : 558.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_127785g0010 No alias (at2g03880 : 512.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_20746g0010 No alias (at1g11290 : 522.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_34492g0020 No alias (at3g03580 : 414.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_385322g0010 No alias (at1g08070 : 385.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_42343g0010 No alias (at4g02750 : 579.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_64083g0010 No alias (at1g11290 : 632.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_653417g0010 No alias (at4g13650 : 731.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00005384-RA No alias (at3g12770 : 639.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00017551-RA No alias (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056375-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g110010 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen12g032510 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 338
IPR002885 Pentatricopeptide_repeat 391 439
IPR002885 Pentatricopeptide_repeat 88 135
IPR032867 DYW_dom 666 789
IPR002885 Pentatricopeptide_repeat 495 521
IPR002885 Pentatricopeptide_repeat 193 222
IPR002885 Pentatricopeptide_repeat 636 662
IPR002885 Pentatricopeptide_repeat 568 592
IPR002885 Pentatricopeptide_repeat 35 56
IPR002885 Pentatricopeptide_repeat 59 83
IPR002885 Pentatricopeptide_repeat 162 184
No external refs found!