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  5. Potri.002G237100

Potri.002G237100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.002G237100
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
102435 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_25971 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g31920 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.02 Orthogroups_2024-Update
At3g03580 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Orthogroups_2024-Update
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g48200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Brara.E01438.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G077420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G289802 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G160300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G134700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_4438g0010 No alias (at1g11290 : 719.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_6413g0010 No alias (at4g18750 : 192.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00016965-RA No alias (at1g11290 : 683.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00036565-RA No alias (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.006G001200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Pp1s183_52V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Solyc02g093380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 103 149
IPR002885 Pentatricopeptide_repeat 204 249
IPR002885 Pentatricopeptide_repeat 505 553
IPR032867 DYW_dom 682 804
IPR002885 Pentatricopeptide_repeat 580 604
IPR002885 Pentatricopeptide_repeat 279 303
IPR002885 Pentatricopeptide_repeat 176 201
IPR002885 Pentatricopeptide_repeat 78 98
IPR002885 Pentatricopeptide_repeat 307 332
IPR002885 Pentatricopeptide_repeat 380 403
IPR002885 Pentatricopeptide_repeat 409 438
No external refs found!