Potri.003G031900

Description : Pre-mRNA-processing-splicing factor

Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.003G031900
Cluster	HCCA clusters: cluster_0172

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi1g48264	No alias	Pre-mRNA-processing-splicing factor	0.03	Orthogroups_2024-Update
Pp1s101_8V6	No alias	F18B13.15; splicing factor, putative [Arabidopsis thaliana]	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017069	snRNA binding	None	Extended
MF	GO:0017070	U6 snRNA binding	IEA	InterProScan predictions
MF	GO:0030623	U5 snRNA binding	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019580	Prp8_U6-snRNA-bd	1464	1622
IPR019582	RRM_spliceosomal_PrP8	1007	1097
IPR012591	PRO8NT	77	228
IPR000555	JAMM/MPN+_dom	2123	2221
IPR019581	Prp8_U5-snRNA-bd	1232	1365
IPR012984	PROCT	2234	2354
IPR012592	PROCN	417	822
IPR021983	PRP8_domainIV	1782	2011

External Links

No external refs found!

Potri.003G031900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation