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  5. Sopen11g030400

Sopen11g030400


Description : RNA polymerase Rpb1, domain 5


Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g030400
Cluster HCCA clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
At5g60040 No alias DNA-directed RNA polymerase subunit... 0.06 Orthogroups_2024-Update
Cre03.g165750 No alias nuclear RNA polymerase C1 0.03 Orthogroups_2024-Update
GRMZM2G080176 No alias nuclear RNA polymerase C1 0.02 Orthogroups_2024-Update
LOC_Os04g41490 No alias DNA-directed RNA polymerase III subunit RPC1, putative, expressed 0.03 Orthogroups_2024-Update
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.02 Orthogroups_2024-Update
Pp1s26_192V6 No alias dna-directed rna polymerase iii largest 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007080 RNA_pol_Rpb1_1 22 352
IPR007083 RNA_pol_Rpb1_4 721 826
IPR000722 RNA_pol_asu 354 520
IPR007066 RNA_pol_Rpb1_3 523 695
IPR007081 RNA_pol_Rpb1_5 833 1323
No external refs found!