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  5. Sopen11g030860

Sopen11g030860


Description : PPR repeat family


Gene families : OG_42_0008738 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008738_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g030860
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G475980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G067300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G204100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 134 179
IPR002885 Pentatricopeptide_repeat 235 284
IPR002885 Pentatricopeptide_repeat 341 389
IPR002885 Pentatricopeptide_repeat 203 233
IPR002885 Pentatricopeptide_repeat 310 338
No external refs found!