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  5. Sopen11g030890

Sopen11g030890


Description : Core histone H2A/H2B/H3/H4


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g030890
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_29055 No alias putative histone h2a.4 0.03 Orthogroups_2024-Update
A4A49_30810 No alias histone h2ax 0.03 Orthogroups_2024-Update
At1g08880 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7] 0.03 Orthogroups_2024-Update
At1g51060 No alias Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681] 0.04 Orthogroups_2024-Update
At5g27670 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178UFF2] 0.04 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.03 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.C01065.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.06 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.04 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G109448 No alias histone H2A 12 0.02 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.03 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.03G148100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.05 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Glyma.13G286000 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.05 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.05 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.05 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.06 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.04 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.04 Orthogroups_2024-Update
HORVU1Hr1G005870.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU1Hr1G071960.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU2Hr1G043860.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.04 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
MA_191819g0010 No alias (at4g27230 : 166.0) Encodes HTA2, a histone H2A... 0.02 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.02 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.03 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.02 Orthogroups_2024-Update
PSME_00008214-RA No alias (q75l11|h2a6_orysa : 120.0) Probable histone H2A.6 -... 0.02 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
PSME_00015856-RA No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.02 Orthogroups_2024-Update
Pp1s55_112V6 No alias histone 2 0.02 Orthogroups_2024-Update
Seita.2G287100.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.9G450000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.06 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g010400 No alias Histone H2A (AHRD V3.3 *** K4CR67_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.05 Orthogroups_2024-Update
Solyc09g082710 No alias Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC) 0.05 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.03 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.04 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.04 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.03 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 100 133
IPR007125 Histone_H2A/H2B/H3 20 97
No external refs found!