Potri.003G110100

Description : chromatin remodeling 4

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Populus release: Potri.003G110100
Cluster	HCCA clusters: cluster_0090

Target	Alias	Description	ECC score	Gene Family Method
A4A49_50225	No alias	chromatin structure-remodeling complex protein syd	0.02	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Bradi1g44177	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Glyma.10G250500	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
Glyma.13G215900	No alias	chromatin-remodeling protein 11	0.03	Orthogroups_2024-Update
Glyma.17G022300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
HORVU3Hr1G012850.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	Orthogroups_2024-Update
HORVU7Hr1G041450.33	No alias	SMARCA component *(SYD/BRM/MINU)	0.02	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.02	Orthogroups_2024-Update
Pp1s360_39V6	No alias	syd atpase chromatin binding	0.03	Orthogroups_2024-Update
Seita.4G112400.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.03	Orthogroups_2024-Update
Solyc01g090650	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.04	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	628	678
IPR000330	SNF2_N	736	1013
IPR019787	Znf_PHD-finger	75	118
IPR009463	DUF1087	1334	1374
IPR001650	Helicase_C	1040	1150

External Links

No external refs found!