Sopen12g001100

Description : Zinc knuckle

Gene families : OG_42_0001386 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001386_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g001100
Cluster	HCCA clusters: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
Sopen01g014030	No alias	hypothetical protein	0.04	Orthogroups_2024-Update
Sopen07g010890	No alias	hypothetical protein	0.05	Orthogroups_2024-Update
Sopen08g013180	No alias	Zinc knuckle	0.03	Orthogroups_2024-Update
Sopen09g015650	No alias	Zinc knuckle	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	741	756

External Links

No external refs found!